ORCID
- Ahmed Barhoum: 0000-0002-4859-5264
Abstract
Rapid, highly sensitive, and accurate virus circulation monitoring techniques are critical to limit the spread of the virus and reduce the social and economic burden. Therefore, point-of-use diagnostic devices have played a critical role in addressing the outbreak of COVID-19 (SARS-CoV-2) viruses. This review provides a comprehensive overview of the current techniques developed for the detection of SARS-CoV-2 in various body fluids (e.g., blood, urine, feces, saliva, tears, and semen) and considers the mutations (i.e., Alpha, Beta, Gamma, Delta, Omicron). We classify and comprehensively discuss the detection methods depending on the biomarker measured (i.e., surface antigen, antibody, and nucleic acid) and the measurement techniques such as lateral flow immunoassay (LFIA), enzyme-linked immunosorbent assay (ELISA), reverse transcriptase-polymerase chain reaction (RT-PCR), reverse transcription loop-mediated isothermal amplification (RT-LAMP), microarray analysis, clustered regularly interspaced short palindromic repeats (CRISPR) and biosensors. Finally, we addressed the challenges of rapidly identifying emerging variants, detecting the virus in the early stages of infection, the detection sensitivity, selectivity, and specificity, and commented on how these challenges can be overcome in the future.
Keywords
Biosensors, Clustered regularly interspaced short palindromic repeats, COVID-19 virus diagnosis, Enzyme-linked immunosorbent assay, Lateral flow immunoassay, Loop-mediated isothermal amplification, Microarray assays, Reverse transcriptase-polymerase chain reaction
DOI Link
Publication Date
2022-01-01
Publication Title
TrAC - Trends in Analytical Chemistry
Volume
157
ISSN
0165-9936
Deposit Date
2026-07-16
Creative Commons License

This work is licensed under a Creative Commons Attribution 4.0 International License.
Additional Links
Recommended Citation
Mostafa, Menna; Barhoum, Ahmed; Sehit, Ekin; Gewaid, Hossam; Mostafa, Eslam; Omran, Mohamed M.; Abdalla, Mohga S.; Abdel-Haleem, Fatehy M.; Altintas, Zeynep; and Forster, Robert J., "Current trends in COVID-19 diagnosis and its new variants in physiological fluids: Surface antigens, antibodies, nucleic acids, and RNA sequencing" (2022). Research Outputs: 2025-Present. 25.
https://arrow.tudublin.ie/scschcpsro/25